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Newton, Irene L. (Ed.)ABSTRACT Here, we present virMine 2.0, the next generation of the virMine software tool. virMine 2.0 uses an exclusion technique to remove nonviral data from sequencing reads and scores the remaining data based on relatedness to viral elements, eliminating the sole dependency on homology identification.more » « less
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Johnson, Genevieve; Stark, Nicole; Wolfe, Alan J.; Putonti, Catherine; Baltrus, David A. (, Microbiology Resource Announcements)ABSTRACT Recently, we isolated a temperate bacteriophage, Pseudomonas phage Dobby, from a calcium oxalate kidney stone. Here, we present the complete genome of the bacterial host harboring this phage, Pseudomonas aeruginosa UMB2738. From the analysis of the genome sequence, five additional prophage sequences were identified.more » « less
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Johnson, Genevieve; Wolfe, Alan J.; Putonti, Catherine (, Access Microbiology)
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Fuji Johnson, Genevieve; Black, Laura; Knobloch, Katherine (, Policy and politics)The interplay between emotion and reason is of interest to scholars of deliberative democracy, yet it has been little analysed. Examining a 2010 Citizens’ Initiative Review (CIR) in Oregon, USA, we find (1) that the participation of chief petitioners, advocates and witnesses is conducive to the expression of emotions and (2) that, aided by moderators, panellists remain focused on clarifying key points and writing their Citizens’ Statement. We conclude that the competitive–collaborative structure of the CIR offers opportunities for emotional expression and reasoned deliberation while productively combining these important forms of discourse.more » « less
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